Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Buytaers, Florence E.Florence E.BuytaersVerhaegen, BavoBavoVerhaegenVan Nieuwenhuysen, TomTomVan NieuwenhuysenRoosens, Nancy H. C.Nancy H. C.RoosensVanneste, KevinKevinVannesteMarchal, KathleenKathleenMarchalDe Keersmaecker, Sigrid C. J.Sigrid C. J.De Keersmaecker2025-08-062024-03-232024-03-252025-08-0620241664-302XWOS:001185093600001https://imec-publications.be/handle/20.500.12860/43718Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive samplingJournal article10.3389/fmicb.2024.1330814WOS:001185093600001STAPHYLOCOCCUS-AUREUSESCHERICHIA-COLIFOODMEDLINE:38495515