Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin- producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bogaerts, BertBertBogaertsNouws, StephanieStephanieNouwsVerhaegen, BavoBavoVerhaegenDenayer, SarahSarahDenayerVan Braekel, JulienJulienVan BraekelWinand, RafRafWinandFu, QiangQiangFuCrombe, FlorenceFlorenceCrombePierard, DenisDenisPierardMarchal, KathleenKathleenMarchalRoosens, Nancy H. C.Nancy H. C.RoosensDe Keersmaecker, Sigrid C. J.Sigrid C. J.De KeersmaeckerVanneste, KevinKevinVanneste2022-02-182022-02-1820212057-5858WOS:000639292700004https://imec-publications.be/handle/20.500.12860/38876Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin- producing Escherichia coli using a reference collection extensively characterized with conventional methodsJournal article10.1099/mgen.0.000531WOS:000639292700004OUTBREAK DETECTIONRESISTANCE GENESIDENTIFICATIONSURVEILLANCEIMPLEMENTATIONPLASMIDFINDERMICROBIOLOGYEPIDEMIOLOGYINFECTIONSRESOURCEMEDLINE:33656437