Browsing by author "Verhaegen, Bavo"
Now showing items 1-7 of 7
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Application of a strain- level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Buytaers, Florence E.; Saltykova, Assia; Mattheus, Wesley; Verhaegen, Bavo; Roosens, Nancy H. C.; Vanneste, Kevin; Laisnez, Valeska; Hammami, Naiima; Pochet, Brigitte; Cantaert, Vera; Marchal, Kathleen; Denayer, Sarah; De Keersmaecker, Sigrid C. J. (2021) -
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
Nouws, Stephanie; Bogaerts, Bert; Verhaegen, Bavo; Denayer, Sarah; Pierard, Denis; Marchal, Kathleen; Roosens, Nancy H. C.; Vanneste, Kevin; De Keersmaecker, Sigrid C. J. (2020) -
Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study
Buytaers, Florence E.; Verhaegen, Bavo; Gand, Mathieu; D'aes, Jolien; Vanneste, Kevin; Roosens, Nancy H. C.; Marchal, Kathleen; Denayer, Sarah; De Keersmaecker, Sigrid C. J. (2022) -
Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies
Buytaers, Florence E.; Saltykova, Assia; Denayer, Sarah; Verhaegen, Bavo; Vanneste, Kevin; Roosens, Nancy H. C.; Pierard, Denis; Marchal, Kathleen; De Keersmaecker, Sigrid C. J. (2021) -
Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices
Nouws, Stephanie; Verhaegen, Bavo; Denayer, Sarah; Crombe, Florence; Pierard, Denis; Bogaerts, Bert; Vanneste, Kevin; Marchal, Kathleen; Roosens, Nancy H. C.; De Keersmaecker, Sigrid C. J. (2023) -
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin- producing Escherichia coli using a reference collection extensively characterized with conventional methods
Bogaerts, Bert; Nouws, Stephanie; Verhaegen, Bavo; Denayer, Sarah; Van Braekel, Julien; Winand, Raf; Fu, Qiang; Crombe, Florence; Pierard, Denis; Marchal, Kathleen; Roosens, Nancy H. C.; De Keersmaecker, Sigrid C. J.; Vanneste, Kevin (2021) -
Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks
Nouws, Stephanie; Bogaerts, Bert; Verhaegen, Bavo; Denayer, Sarah; Laeremans, Lasse; Marchal, Kathleen; Roosens, Nancy H. C.; Vanneste, Kevin; De Keersmaecker, Sigrid C. J. (2021)