Browsing Articles by imec author "00fa89df7ab38f1183f4a53bd5da855f3112cd35"
Now showing items 1-20 of 25
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A GRID computer implementation of the multilevel fast multipole algorithm for full-wave analysis of optical devices
Fostier, Jan; Olyslager, Frank (2007-09) -
Accurate determination of node and arc multiplicities in de Bruijn graphs using conditional random fields
Steyaert, Aranka; Audenaert, Pieter; Fostier, Jan (2020) -
Adaptive scoping: balancing short- and long-term genetic gain in plant breeding
Vanavermaete, David; Fostier, Jan; Maenhout, Steven; De Baets, Bernard (2022) -
BLSSpeller to discover novel regulatory motifs in maize
Seyed Rahmani, Razgar; Decap, Dries; Fostier, Jan; Marchal, Kathleen (2022) -
BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs
Heydari, Mahdi; Miclotte, Gilles; Van de Peer, Yves; Fostier, Jan (2018-08) -
Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples
De Schaetzen van Brienen, Louise; Larmuseau, Maarten; Van der Eecken, Kim; De Ryck, F.; Robbe, P.; Schuh, A.; Fostier, Jan; Ost, Piet; Marchal, Kathleen (2020-07) -
Computational assessment of the feasibility of protonation-based protein sequencing
Miclotte, Giles; Martens, Koen; Fostier, Jan (2020-09) -
Deep scoping: a breeding strategy to preserve, reintroduce and exploit genetic variation
Vanavermaete, David; Fostier, Jan; Maenhout, Steven; De Baets, Bernard (2021) -
Dynamic partitioning of search patterns for approximate pattern matching using search schemes
Renders, Luca; Marchal, Kathleen; Fostier, Jan (2021) -
Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern
Vandersickel, N.; Watanabe, M.; Tao, Q.; Fostier, Jan; Zeppenfeld, K.; Panfilov, A.V. (2018-12) -
elPrep 4: A multithreaded framework for sequence analysis
Herzeel, Charlotte; Costanza, Pascal; Decap, Dries; Fostier, Jan; Verachtert, Wilfried (2019-02) -
elPrep: High-performance preparation of sequence alignment/map files for variant calling
Herzeel, Charlotte; Costanza, Pascal; Decap, Dries; Fostier, Jan; Reumers, Joke (2015) -
Evaluation of the impact of Illumina error correction tools on de novo genome assembly
Heydari, Mahdi; Miclotte, Giles; Demeester, Piet; Van de Peer, Yves; Fostier, Jan (2017-08) -
GABAC: an arithmetic coding solution for genomic data
Voges, J.; Paridaens, Tom; Müntefering, F.; Mainzer, L.S.; Bliss, B.; Yang, M.; Ochoa, I.; Fostier, Jan; Ostermann, J.; Hernaez, M. (2020-04) -
Halvade somatic: Somatic variant calling with Apache Spark
Decap, Dries; Costanza, Pascal; De Schaetzen van Brienen, Louise; Larmuseau, Maarten; Herzeel, Charlotte; Wuyts, Roel; Marchal, Kathleen; Fostier, Jan (2022) -
Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce
Decap, Dries; Reumers, Joke; Herzeel, Charlotte; Costanza, Pascal; Fostier, Jan (2017-03) -
Halvade: scalable sequence analysis with MapReduce
Decap, Dries; Reumers, Joke; Herzeel, Charlotte; Costanza, Pascal; Fostier, Jan (2015) -
Illumina error correction near highly repetitive DNA regions improves de novo genome assembly
Heydari, Mahdi; Miclotte, Giles; Van de Peer, Yves; Fostier, Jan (2019-06) -
Improved Node and Arc Multiplicity Estimation in De Bruijn Graphs Using Approximate Inference in Conditional Random Fields
Steyaert, Aranka; Audenaert, Pieter; Fostier, Jan (2023)