Browsing by author "Herzeel, Charlotte"
Now showing items 1-14 of 14
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A comparison of three programming languages for a full-fledged next-generation sequencing tool
Costanza, Pascal; Herzeel, Charlotte; Verachtert, Wilfried (2019) -
Comparing ease of programming in C++, Go, and Java for implementing a next-generation sequencing tool
Costanza, Pascal; Herzeel, Charlotte; Verachtert, Wilfried (2019) -
elPrep - high-performance preparation of SAM files for variant calling
Herzeel, Charlotte; Costanza, Pascal; Souche, Erika (2017) -
elPrep 4: A high-performance tool for sequence analysis
Herzeel, Charlotte (2019) -
elPrep 4: A multithreaded framework for sequence analysis
Herzeel, Charlotte; Costanza, Pascal; Decap, Dries; Fostier, Jan; Verachtert, Wilfried (2019-02) -
elPrep: High-performance preparation of sequence alignment/map files for variant calling
Herzeel, Charlotte; Costanza, Pascal; Decap, Dries; Fostier, Jan; Reumers, Joke (2015) -
Halvade somatic: Somatic variant calling with Apache Spark
Decap, Dries; Costanza, Pascal; De Schaetzen van Brienen, Louise; Larmuseau, Maarten; Herzeel, Charlotte; Wuyts, Roel; Marchal, Kathleen; Fostier, Jan (2022) -
Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce
Decap, Dries; Reumers, Joke; Herzeel, Charlotte; Costanza, Pascal; Fostier, Jan (2017-03) -
Halvade: scalable sequence analysis with MapReduce
Decap, Dries; Reumers, Joke; Herzeel, Charlotte; Costanza, Pascal; Fostier, Jan (2015) -
High-performance preparation of SAM/BAM files for variant calling
Herzeel, Charlotte; Costanza, Pascal; Reumers, Joke (2014) -
Multithreaded variant calling in elPrep 5
Herzeel, Charlotte; Costanza, Pascal; Decap, Dries; Fostier, Jan; Wuyts, Roel; Verachtert, Wilfried (2021) -
Performance analysis of a parallel, multi-node pipeline for DNA sequencing
Decap, Dries; Reumers, Joke; Herzeel, Charlotte; Costanza, Pascal; Fostier, Jan (2016) -
Resilient work stealing
Costanza, Pascal; Herzeel, Charlotte; De Meuter, Wolfgang; Wuyts, Roel (2017) -
Resolving load balancing issues in BWA on NUMA multicore architectures
Herzeel, Charlotte; Ashby, Tom; Costanza, Pascal; De Meuter, Wolfgang (2014)