Browsing by author "Marchal, Kathleen"
Now showing items 1-20 of 56
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1-((2,4-dichlorophenethyl)amino)-3-phenoxypropan-2-ol kills Pseudomonas aeruginosa through extensive membrane damage
Defraine, Valerie; Liebens, Veerle; Loos, Evelien; Swings, Toon; Weytjens, Bram; Fierro, Carolina; Marchal, Kathleen; Sharkey, Liam; O'Neill, Alex; Corbau, Romu; Marchand, Arnaud; Chaltin, Patrick; Fauvart, Maarten; Michiels, Jan (2018) -
A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches
Bogaerts, Bert; Delcourt, Thomas; Soetaert, Karine; Boarbi, Samira; Ceyssens, Pieter-Jan; Winand, Raf; Van Braekel, Julien; De Keersmaecker, Sigrid C. J.; Roosens, Nancy H. C.; Marchal, Kathleen; Mathys, Vanessa; Vanneste, Kevin (2021) -
A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium
Gand, M.; Mattheus, W.; Roosens, N.; Dierick, K.; Marchal, Kathleen; Bertrand, S.; De Keersmaecker, S.C.J. (2020) -
A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay
Gand, M.; Mattheus, W.; Roosens, N.H.C.; Dierick, K.; Marchal, Kathleen; De Keersmaecker, S.C.J.; Bertrand, S. (2020) -
A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine
Buytaers, F.E.; Saltykova, A.; Denayer, S.; Verhaegen, B.; Vanneste, K.; Roosens, N.H.C.; Piérard, D.; Marchal, Kathleen; De Keersmaecker, S.C.J. (2020) -
A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products
Buytaers, Florence E.; Fraiture, Marie-Alice; Berbers, Bas; Vandermassen, Els; Hoffman, Stefan; Papazova, Nina; Vanneste, Kevin; Marchal, Kathleen; Roosens, Nancy H. C.; De Keersmaecker, Sigrid C. J. (2021) -
Application of a strain- level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak
Buytaers, Florence E.; Saltykova, Assia; Mattheus, Wesley; Verhaegen, Bavo; Roosens, Nancy H. C.; Vanneste, Kevin; Laisnez, Valeska; Hammami, Naiima; Pochet, Brigitte; Cantaert, Vera; Marchal, Kathleen; Denayer, Sarah; De Keersmaecker, Sigrid C. J. (2021) -
Associating expression and genomic data using co-occurrence measures
Larmuseau, Maarten; Verbeke, Lieven; Marchal, Kathleen (2019-05) -
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities
Van Uffelen, Alexander; Posadas, Andres; Roosens, Nancy H. C.; Marchal, Kathleen; De Keersmaecker, Sigrid C. J.; Vanneste, Kevin (2024) -
BLSSpeller to discover novel regulatory motifs in maize
Seyed Rahmani, Razgar; Decap, Dries; Fostier, Jan; Marchal, Kathleen (2022) -
Catabolic task division between two near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium: consequences for the interspecies consortium metabolic model
Albers, Pieter; Lood, Cédric; Ozturk, Basak; Horemans, Benjamin; Lavigne, Rob; van Noort, Vera; De Mot, René; Marchal, Kathleen; Sanchez-Rodriguez, A.; Springael, D. (2018-01) -
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
Berbers, Bas; Saltykova, A.; Garcia-Graells, C.; Philipp, P.; Arella, F.; Marchal, Kathleen; Winand, K.; Vanneste, K.; Roosens, N.H.V.; De Keersmaecker, S.C.J. (2020) -
Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples
De Schaetzen van Brienen, Louise; Larmuseau, Maarten; Van der Eecken, Kim; De Ryck, F.; Robbe, P.; Schuh, A.; Fostier, Jan; Ost, Piet; Marchal, Kathleen (2020-07) -
Comparative transcriptome analysis of two maize genotypes with different tolerance to salt stress
Mohasseli, Taher; Seyed Rahmani, Razgar; Darvishzadeh, Reza; Dezhsetan, Sara; Marchal, Kathleen (2022) -
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-
Saltykova, Assia; Wuyts, Veronique; Mattheus, B.; Bertrand, S.; Roosens, N.H.C.; Marchal, Kathleen; De Keersmaecker, S.C.J. (2018-02) -
Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing: Neisseria meningitidis as a Proof of Concept
Saltykova, A.; Mattheus, W.; Bertrand, S.; Roosens, N.H.C.; Marchal, Kathleen; De Keersmaecker, S.C.J. (2019-12) -
Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance
Bloemen, Bram; Gand, Mathieu; Vanneste, Kevin; Marchal, Kathleen; Roosens, Nancy H. C.; De Keersmaecker, Sigrid C. J. (2023) -
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java
Gand, Mathieu; Matheus, W.; Saltykova, Assia; Roosens, N.; Dierick, K.; Marchal, Kathleen; De Keersmaecker, S.C.J.; Bertrand, S. (2019-06) -
Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination
Berbers, B.; Ceyssens, P.-J.; Bogaerts, P.; Vanneste, K.; Roosens, N.H.C.; Marchal, Kathleen; De Keersmaecker, S.C.J. (2020) -
Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plant
Shi, T.; Rahmani, R.S.; Gugger, P.F.; Wang, M.; Li, H.; Zhang, Y.; Li, Z.; Wang, Q.; Van de Peer, Y.; Marchal, Kathleen; Chen, J. (2020)