Browsing by Author "De Keersmaecker, S.C.J."

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium

A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-

Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing: Neisseria meningitidis as a Proof of Concept

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java

Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination

First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E.coli isolated from meat products at retail in Belgium in 2015

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

The benefits of whole genome sequencing for foodborne outbreak investigation from the perspective of a national reference laboratory in a smaller country