Browsing by Author "Fostier, Jan"

A BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

A GRID computer implementation of the multilevel fast multipole algorithm for full-wave analysis of optical devices

Accurate determination of node and arc multiplicities in de Bruijn graphs using conditional random fields

Accurate determination of node and arc multiplicities in de Bruijn graphs using conditional random fields

Adaptive scoping: balancing short- and long-term genetic gain in plant breeding

An asynchronous parallel multilevel fast multipole algorithm

Approximate Pattern Matching Using Search Schemes and In-Text Verification

Automated Design of Efficient Search Schemes for Lossless Approximate Pattern Matching

b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index

b-move: faster lossless approximate pattern matching in a run-length compressed index

BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

BLSSpeller to discover novel regulatory motifs in maize

BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs

Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples

Computational assessment of the feasibility of protonation-based protein sequencing

Deep scoping: a breeding strategy to preserve, reintroduce and exploit genetic variation

Dynamic partitioning of search patterns for approximate pattern matching using search schemes

Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern

ELLIPSIS: robust quantification of splicing in scRNA-seq

elPrep 4: A multithreaded framework for sequence analysis