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Browsing by Author "Van Braekel, Julien"

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    A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches

    Bogaerts, Bert
    ;
    Delcourt, Thomas
    ;
    Soetaert, Karine
    ;
    Boarbi, Samira
    ;
    Ceyssens, Pieter-Jan
    Journal article
    2021, JOURNAL OF CLINICAL MICROBIOLOGY, (59) 6, p.e00202-21
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    Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

    Bogaerts, Bert
    ;
    Winand, Raf
    ;
    Van Braekel, Julien
    ;
    Hoffman, Stefan
    ;
    Roosens, Nancy H. C.
    Journal article
    2021, MICROBIAL GENOMICS, (7) 11
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    Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases

    Winand, Raf
    ;
    D'hooge, Elizabet
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    Van Uffelen, Alexander
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    Bogaerts, Bert
    ;
    Van Braekel, Julien
    Journal article
    2025-AUG 6, BMC GENOMICS, (26) 1
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    Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation

    Bogaerts, Bert
    ;
    Winand, Raf
    ;
    Van Braekel, Julien
    ;
    Mattheus, Wesley
    ;
    De Keersmaecker, Sigrid C. J.
    Journal article
    2021, MICROORGANISMS, (9) 4, p.767
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    Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin- producing Escherichia coli using a reference collection extensively characterized with conventional methods

    Bogaerts, Bert
    ;
    Nouws, Stephanie
    ;
    Verhaegen, Bavo
    ;
    Denayer, Sarah
    ;
    Van Braekel, Julien
    Journal article
    2021, MICROBIAL GENOMICS, (7) 3, p.000531

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