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Browsing by Author "Van de Peer, Yves"

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    A cytoscape app for motif enumeration with ISMAGS

    Van Bortel, Thomas
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    Melckenbeeck, Ine
    ;
    Houbraken, Maarten
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    Audenaert, Pieter  
    ;
    Colle, Didier  
    Journal article
    2017-02, Bioinformatics, (33) 3, p.461-463
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    BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs

    Heydari, Mahdi
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    Miclotte, Gilles
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    Van de Peer, Yves
    ;
    Fostier, Jan  
    Journal article
    2018-08, BMC Bioinformatics, 19, p.311
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    Evaluation of the impact of Illumina error correction tools on de novo genome assembly

    Heydari, Mahdi
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    Miclotte, Giles  
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    Demeester, Piet  
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    Van de Peer, Yves
    ;
    Fostier, Jan  
    Journal article
    2017-08, BMC Bioinformatics, (18) 374, p.1-13
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    Evolution of isoform-level gene expression patterns across tissues during lotus species divergence

    Zhang, Yue
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    Yang, Xingyu
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    Van de Peer, Yves
    ;
    Chen, Jinming
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    Marchal, Kathleen  
    ;
    Shi, Tao
    Journal article
    2022, PLANT JOURNAL, (112) 3, p.830-846
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    Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

    Heydari, Mahdi
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    Miclotte, Giles  
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    Van de Peer, Yves
    ;
    Fostier, Jan  
    Journal article
    2019-06, BMC Bioinformatics, 20, p.298
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    Network analysis of woody biomass

    Mizrachi, Eshchar
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    Verbeke, Lieven
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    Van de Peer, Yves
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    Marchal, Kathleen  
    ;
    Myburg, Alexander A.
    Journal article
    2017, Cell Systems, (4) 2, p.141
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    Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing

    Mizrachi, Eshchar
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    Verbeke, Lieven
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    Christie, Nanette
    ;
    Mansfield, Shawn D.
    ;
    Davis, Mark F.
    Journal article
    2017, Proceedings of the National Academy of Sciences, (114) 5, p.1195-1200
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    OMSim: a simulator for optical map data

    Miclotte, Giles  
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    Plaisance, S.
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    Rombauts, S.
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    Van de Peer, Yves
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    Audenaert, Pieter  
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    Fostier, Jan  
    Journal article
    2017-09, Bioinformatics, (33) 17, p.2740-2742
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    Optimising orbit counting of arbitrary order by equation selection

    Melckenbeeck, Ine
    ;
    Audenaert, Pieter  
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    Van Parys, Thomas
    ;
    Van de Peer, Yves
    ;
    Colle, Didier  
    Journal article
    2019-01, BMC Bioinformatics, 20, p.27
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    The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil

    Ebadi, Mehrshad
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    Bafort, Quinten
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    Mizrachi, Eshchar
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    Audenaert, Pieter  
    ;
    Simoens, Pieter  
    Journal article
    2023, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, (120) 41, p.Art. e2307289120
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    The evolutionary significance of polyploidy

    Van de Peer, Yves
    ;
    Mizrachi, E.
    ;
    Marchal, Kathleen  
    Journal article
    2017-07, Nature Reviews Genetics, (18) 7, p.411-424

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