Browsing by Author "Marchal, Kathleen"

1-((2,4-dichlorophenethyl)amino)-3-phenoxypropan-2-ol kills Pseudomonas aeruginosa through extensive membrane damage

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium

A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products

Application of a strain- level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

Associating expression and genomic data using co-occurrence measures

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

BLSSpeller to discover novel regulatory motifs in maize

Catabolic task division between two near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium: consequences for the interspecies consortium metabolic model

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples

Comparative transcriptome analysis of two maize genotypes with different tolerance to salt stress

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-

Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing: Neisseria meningitidis as a Proof of Concept

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java

Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination

Digital profiling of gene expression from histology images with linearized attention