Publication:

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Date

2024
Journal article
https://doi.org/10.3389/fmicb.2024.1330814
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dc.contributor.authorBuytaers, Florence E.
dc.contributor.authorVerhaegen, Bavo
dc.contributor.authorVan Nieuwenhuysen, Tom
dc.contributor.authorRoosens, Nancy H. C.
dc.contributor.authorVanneste, Kevin
dc.contributor.authorMarchal, Kathleen
dc.contributor.authorDe Keersmaecker, Sigrid C. J.
dc.contributor.imecauthorMarchal, Kathleen
dc.contributor.orcidimecMarchal, Kathleen::0000-0002-2169-4588
dc.date.accessioned2025-08-06T10:08:28Z
dc.date.available2024-03-23T17:20:40Z
dc.date.available2024-03-25T10:41:02Z
dc.date.available2025-08-06T10:08:28Z
dc.date.embargo2024-03-01
dc.date.issued2024
dc.description.wosFundingTextWe are grateful to the technicians from the NRL of S. aureus (Sciensano) for their work on the bacterial isolates and the food samples, as well as Stephanie Nouws and Bert Bogaerts for their work on the whole genome sequencing of these isolates. We would also like to thank Stefan Hoffman from Transversal Activities in Applied Genomics (Sciensano) for the set-up of Oxford Nanopore Technologies in our service.
dc.identifier.doi10.3389/fmicb.2024.1330814
dc.identifier.issn1664-302X
dc.identifier.pmidMEDLINE:38495515
dc.identifier.urihttps://imec-publications.be/handle/20.500.12860/43718
dc.publisherFRONTIERS MEDIA SA
dc.source.beginpageArt. 1330814
dc.source.endpageN/A
dc.source.issueN/A
dc.source.journalFRONTIERS IN MICROBIOLOGY
dc.source.numberofpages12
dc.source.volume15
dc.subject.keywordsSTAPHYLOCOCCUS-AUREUS
dc.subject.keywordsESCHERICHIA-COLI
dc.subject.keywordsFOOD
dc.title

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

dc.typeJournal article
dspace.entity.typePublication
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